24 Hour Human Reference Atlas Event

Let's map the human body at single-cell resolution!

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To join virtually use this zoom link: https://iu.zoom.us/j/84865289237

About

Over the course of 24 hours, scholars and practitioners from around the globe will present and discuss their work in a fun and accessible style. We will feature behind-the-scenes videos, demonstrate valuable tools and methodologies, and have fun exploring the human body “landscape” across scale!

We hope the event will help kickoff the holiday season, create ever more excitement for the power and value of science, share the pleasures of scientific discovery, and give good energy to all on this planet who have been affected by the ongoing pandemic.

Saturday, Dec 10th 2022
Main times are in EST (GMT-5)

...

12PM

5PM in London (GMT), 2AM in Tokyo (GMT+9)

Welcome

→ https://youtu.be/Pbt6Sd_AVp4

With Katy Börner and Andreas Bueckle (Indiana University)

Click here to learn more about the Human Reference Atlas that experts from 17 consortia are building.

Trivia

...

1PM

6PM in London (GMT), 3AM in Tokyo (GMT+9)

Panel: What is a Human Reference Atlas?

→ https://youtu.be/w1wtboxbElc

Moderator: Todd Theriault (Co-Curator, Places & Spaces, Indiana University) with Aviv Regev (Human Cell Atlas), Sanjay Jain (Washington University in St. Louis), Kristin Ardlie (Broad Institute of MIT & Harvard), James C. Gee (University of Pennsylvania)

...

2PM

7PM in London (GMT), 4AM in Tokyo (GMT+9)

Panel: Who funds the Atlas?

→ https://youtu.be/yYUbMFraoE8

Moderator: Katy Börner (Indiana University) with Christian Desaintes (European Commission), Yong Yao (NIH/NIMH), Amy Bernard (Kavli), Jonah Cool (Chan Zuckerberg Initiative)

...

3PM

8PM in London (GMT), 5AM in Tokyo (GMT+9)

Creation of Homo Perfectus

→ https://youtu.be/qJ8dgm3Vr7c

With Marie Dauenheimer (Board Certified Medical Illustrator)

...

4PM

9PM in London (GMT), 6AM in Tokyo (GMT+9)

Molecular Landscapes

→ https://youtu.be/YZ9OW6xJ0DQ

Gaël McGill (Digizyme)

Trivia

...

5PM

10PM in London (GMT), 7AM in Tokyo (GMT+9)

Panel: Naming Cells Using Validated Antibodies

→ https://youtu.be/O-s6vNAUon0

Moderator: Andrea Radtke (NIH/NIAID) with industry representatives from BioLegend, Leica Microsystems, BostonGene, Josh Croteau (BioLegend Inc.), Werner Muller (University of Manchester, Miltenyi Biotec), Michael Smith (Leica Microsystems), Jeremy Fisher (Cell Signaling Technology)

...

6PM

11PM in London (GMT), 8AM in Tokyo (GMT+9)

Naming Cells Using Gene Expressions

→ https://youtu.be/k4KbFJShLoo

CellTypist by Chuan Xu (Sanger Institute, UK) and Spatial Transcriptomics explained by Jean Fan (Johns Hopkins University), see also https://www.youtube.com/jefworks

...

7PM

12AM in London (GMT), 9AM in Tokyo (GMT+9)

Segmenting Hierarchies of Cells

→ https://youtu.be/hnUNpr0uoww

With John Hickey (Stanford University) and David van Valen (California Institute of Technology)

...

8PM

1AM in London (GMT), 10AM in Tokyo (GMT+9)

Panel: Human Atlas Design in Multiple Dimensions

→ https://youtu.be/Kzwurl9kT7M

Moderator: Todd Theriault (Co-Curator, Places & Spaces, Indiana University) with Heidi Schlehlein (Owner & Lead Designer, SciSculpt, https://www.scisculpt.com, https://www.heidischlehlein.com), Rachel Bajema, (Owner, Principal Medical and Scientific Illustrator/Animator, Bajema Studios, LLC, http://www.bajemastudios.com, http://www.rachelbajema.com)

...link

9PM

2AM in London (GMT), 11AM in Tokyo (GMT+9)

Panel: Human Body Exhibits

→ https://youtu.be/MhBAB15krf0

Moderator: Stephen M. Uzzo (National Museum of Mathematics) with Yoon Chung Han (San José State University), Joe Heimlich (Center of Science and Industry), Elizabeth Record (Indiana University), Scott Echols (Scarlet Imaging), Arthur Olson (Scripps Research Institute), and Weidi Zhang (Arizona State University).

...

10PM

3AM in London (GMT), 12PM in Tokyo (GMT+9)

VR Organ Gallery

→ https://youtu.be/uOY9X-Bp-8U

With Andreas Bueckle, Catherine Qing, Shefali Luley, Riley Halloran, Naval Pandey, Yash Kumar (Indiana University)

...

11PM

4AM in London (GMT), 1PM in Tokyo (GMT+9)

Predictive Models of Single Cells

→ https://youtu.be/tvjHxrGkbOo

With Paul Macklin & James Glazier (Indiana University)

Sunday, Dec 11th 2022

...

12AM

5AM in London (GMT), 2PM in Tokyo (GMT+9)

Music for Human and Sentient Bodies

→ https://youtu.be/jHo2SJUYfic

With Miggy Torres and Peter Kienle (Indiana University) and Philip Beesley (Living Systems Architecture, University of Toronto)

...link

1AM

6AM in London (GMT), 3PM in Tokyo (GMT+9)

Video: Human Reference Atlas Basics

→ https://youtu.be/l9MqDpTozZ8

  • HuBMAP Overview
  • Exploration User Interface (EUI) Demo with Bruce W. Herr II
  • Intro to the Registration User Interface (RUI) with Andreas Bueckle
  • The HuBMAP Common Coordinate Framework (CCF)
  • Open Consent Pitch with Mike Snyder
  • Tissue Data Acquisition and Analysis with Jeffrey Spraggins
  • HuBMAP Portal Design and Usage: Data and Code in the 1st Portal Release
  • Data Harmonization and Seurat with Rahul Satija
  • Introduction to Ontologies with Mark Musen
...

2AM

7AM in London (GMT), 4PM in Tokyo (GMT+9)

Predictive Models of Human Tissue Development and Function

→ https://youtu.be/IEim0JZYt1Q

With Shankar Subramaniam (UCSD)

...

3AM

8AM in London (GMT), 5PM in Tokyo (GMT+9)

Predictive Models of Human Body

→ https://youtu.be/2Y4QVlHlI9Q

Peter Hunter (University of Auckland, New Zealand)

...

4AM

9AM in London (GMT), 6PM in Tokyo (GMT+9)

Computational Cell Atlas Assembly

→ https://youtu.be/jIWDaCHtM7w

With Chuxi Xiao, Erpai Luo, Yuzhuo Li, Yixin Chen, Jiaqi Li, Lei Wei, Xuegong Zhang (Tsinghua University, China)

...link

5AM

10AM in London (GMT), 7PM in Tokyo (GMT+9)

Video: Human Reference Atlas Data

→ https://youtu.be/CyscM09PwTc

  • Intro to Anatomical Structures and Cell Types Plus Biomarkers (ASCT+B) Tables
  • ASCT+B Table Format and Authoring by Ellen M. Quardokus
  • ASCT+B Visualizer Demo
  • Atlas Construction and Usage with Katy Börner
  • ASCT+B for Collision Detection in RUI and Semantic Search in EUI
  • ASCT+B Reporter Demo with Hrishikesh Paul (June 2021)
  • Vitessce and Data Portal with Mark Keller
  • RUI 1.7.0 Demo
  • EUI 1.7.0 Demo
...link

6AM

11AM in London (GMT), 8PM in Tokyo (GMT+9)

Video: Human Reference Atlas People

→ https://youtu.be/purysOASedY

  • HuBMAP Data Portal Overview (2021)
  • CODEX Data on HuBMAP Portal with John Hickey
  • Using the Exploration User interface (EUI) on the GTEx Portal
  • Introduction to the HRA-CCF
  • RUI v3.0 Tutorial with Andreas Bueckle
  • HuBMAP Halfway Point Video
  • How HuBMAP Works with Richard Conroy
  • How to Map Human Intestines with Mike Snyder
  • The Great VHMOOC Blooper Reel
...link

7AM

12PM in London (GMT), 9PM in Tokyo (GMT+9)

Video: The Human Biomolecular Atlas

→ https://youtu.be/U651JLBAbB8

With Jeff Spraggins (Vanderbilt University) and Katy Börner (Indiana University)

...

8AM

1PM in London (GMT), 10PM in Tokyo (GMT+9)

Mapping Whole Human Organs at High Resolution

→ https://youtu.be/xwMPhqotMHE

With Ali Erturk (Helmholtz Institute Munich, Germany) & Peter D. Lee (University College London, UK), see also https://www.youtube.com/watch?v=XvdMgeXxzj4

...

9AM

2PM in London (GMT), 11PM in Tokyo (GMT+9)

Human Vasculature as a Latitude and Longitude System

→ https://youtu.be/o1e52ZG0d7A

With Griffin Weber (Harvard Medical School), Avinash Boppana (Revala) and Katherine Summers Gustilo (Indiana University)

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10AM

3PM in London (GMT), 12AM in Tokyo (GMT+9)

Panel: Human Reference Atlas Ecosystem

→ https://youtu.be/wtnqz4zZ3uM

Moderator: Katy Börner (Indiana University) with Paulo Czarnewski (Scilifelab, Sweden), Brian Aevermann (CZI) & Jason Hilton (Stanford University), Nancy George (European Bioinformatics Institute [EMBL-EBI], UK), Bruce W. Herr II and Ellen M. Quardokus (Indiana University)

...

11AM

4PM in London (GMT), 1AM in Tokyo (GMT+9)

Panel: Visions for the Future

→ https://youtu.be/wS1nwDL924w

Moderator: Todd Theriault (Co-Curator, Places & Spaces, Indiana University) with Gary Bader (University of Toronto, Canada), Zorina Gallis (NIH), Mike Snyder (Stanford University), Katy Börner (Indiana University)

...

12PM

5PM in London (GMT), 2AM in Tokyo (GMT+9)

End Of Event

Thanks for going with us on this journey!

We would like to thank